## JIRA Report

Type | Key | Status | Summary
--- | --- | --- | ---
Bug | UIMA-6146 | Resolved | uimaj package.html files in wrong format for javadoc tool
Bug | UIMA-6162 | Resolved | Concurrent binary serialization produces corrupt output
Bug | UIMA-6168 | Resolved | protect indexes fails when there were no indexed fs that needed protecting
Bug | UIMA-6170 | Resolved | Ambiguous method call when compiling on Java 13
Bug | UIMA-6187 | Resolved | Bad line endings for all files UIMA_HOME/bin/*.sh
Bug | UIMA-6199 | Resolved | Unindexed document annotation added back to index during deserialization
Bug | UIMA-6200 | Resolved | Constructing aggregate engines is slow
Bug | UIMA-6225 | Resolved | unable to install a pear package into a directory containing special character like <,> or &
Bug | UIMA-6243 | Resolved | JCas returns Annotation when asked for a specific subtype
Bug | UIMA-6244 | Resolved | test case bug, running in windows
Bug | UIMA-6245 | Resolved | CVD - Index out of bounds when expanding Annotation in AnnotationIndex view
Bug | UIMA-6269 | Resolved | select.coveredBy with includeAnnotationsWithEndBeyondBounds has broken edge case
Bug | UIMA-6272 | Resolved | UIMA doesn't build on Java 14
Bug | UIMA-6273 | Resolved | isBeforeV3 variable not reset in BinaryCasSerDes
Bug | UIMA-6274 | Resolved | Setting feature on builtin JCas cover class that was loaded before initializing TypeSystemImpl fails
Bug | UIMA-6276 | Resolved | Potential memory leak in FSClassRegistry
Bug | UIMA-6282 | Resolved | select.at() may fail to respect bounds
Bug | UIMA-6284 | Resolved | select.following() fails to find adjacent annotations
Bug | UIMA-6285 | Resolved | select.following() on a zero-width annotation returns other zero-width annotation at same location
Bug | UIMA-6286 | Resolved | select following finds zero-width annotation at reference end position
Bug | UIMA-6287 | Resolved | FSArray.spliterator() fails to handle PEAR case
Bug | UIMA-6289 | Resolved | SelectFS.coveredBy not selecting annotations with exact same bounds as annotation argument
Bug | UIMA-6295 | Resolved | CAS transportable Java object not serialised or deserialised with compressed binary
Bug | UIMA-6296 | Resolved | SelectFS fsIterator may yield different result set than asList
Bug | UIMA-6297 | Resolved | SelectFS with limit in combination with fsIterator has issues
Bug | UIMA-6303 | Resolved | Logs are spammed with "Import by location/name" messages
Bug | UIMA-6310 | Resolved | JCasClassLoaderTest sometimes fails
Bug | UIMA-6313 | Resolved | PearSpecifier_impl methods return null despite promise not to do so
Bug | UIMA-6318 | Resolved | Deserialization of array subtypes fails (form6)
Bug | UIMA-6342 | Resolved | Moving iterator beyond bounds does not invalidate it
Bug | UIMA-6348 | Resolved | Race-condition in TypeSystemImpl commit
Bug | UIMA-6349 | Resolved | japicmp post processing script fails with Java 16 (UIMAJ)
Bug | UIMA-6352 | Resolved | reinit(CASCompleteSerializer) does not properly reset indexes
Bug | UIMA-6353 | Resolved | Logger_common_impl.error(String arg0, Object arg1, Object arg2) swallows last argument
Dependency upgrade | UIMA-6164 | Resolved | uimaj eclipse plugins not building due to dependency problems
Improvement | UIMA-6160 | Resolved | Single int arg version of select.startAt()?
Improvement | UIMA-6249 | Resolved | remove sync contention in getJCasRegisteredType
Improvement | UIMA-6254 | Resolved | Move API report post-analysis script into the build resources
Improvement | UIMA-6300 | Resolved | deep copy feature for org.apache.uima.analysis_engine.AnalysisEngineDescription class
Improvement | UIMA-6305 | Resolved | Convert UIMAv3 User's Guide from DocBook to Asciidoc
Improvement | UIMA-6308 | Resolved | Refactor some unit tests
Improvement | UIMA-6316 | Resolved | Stop using the deprecated Pack200 when building update sites
Improvement | UIMA-6322 | Resolved | Clean up rat configuration
Improvement | UIMA-6341 | Resolved | Try out p2-layout-resolver
New Feature | UIMA-5936 | Resolved | PearSpecifier should be able to store every parametertype that analysisEngines support
New Feature | UIMA-6128 | Resolved | Allow XMI to be optionally serialized with XML 1.1 instead of only 1.0
New Feature | UIMA-6151 | Resolved | Containment/overlap predicates for AnnotationFS
New Feature | UIMA-6152 | Resolved | "trim" method for AnnotationFS
New Feature | UIMA-6203 | Resolved | Add SerialFormat.XMI_PRETTY
New Feature | UIMA-6283 | Resolved | Annotation relation predicates
Task | UIMA-3484 | Resolved | Fix JavaDoc issues
Task | UIMA-6234 | Resolved | Upgrade to UIMA Parent POM 14
Task | UIMA-6259 | Resolved | Jenkinsfile for UIMA Java SDK
Task | UIMA-6267 | Resolved | UIMA SDK Eclipse Plugins fail to build after Eclipse 2020-09 release
Task | UIMA-6290 | Resolved | Clean up AnnotationIteratorTest
Task | UIMA-6299 | Resolved | Ensure that SNAPSHOT repos are commented out in POMs